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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "MethScope" in publications use:'
type: software
license: MIT
title: 'MethScope: Ultra-Fast Analysis of Sparse DNA Methylome via Recurrent Pattern
  Encoding'
version: 1.0.1
doi: 10.32614/CRAN.package.MethScope
abstract: Methods for analyzing DNA methylation data via Most Recurrent Methylation
  Patterns (MRMPs). Supports cell-type annotation, spatial deconvolution, unsupervised
  clustering, and cancer cell-of-origin inference. Includes C-backed summaries for
  YAME “.cg/.cm” files (overlap counts, log2 odds ratios, beta/depth aggregation),
  an XGBoost classifier, NNLS deconvolution, and plotting utilities. Scales to large
  spatial and single-cell methylomes and is robust to extreme sparsity.
authors:
- family-names: Fu
  given-names: Hongxiang
  email: fhx@seas.upenn.edu
  orcid: https://orcid.org/0000-0002-9873-8606
repository: https://hongxiang2023.r-universe.dev
commit: 850259066f10a0b154e5bb0238724d54d7f02dad
date-released: '2026-02-26'
contact:
- family-names: Fu
  given-names: Hongxiang
  email: fhx@seas.upenn.edu
  orcid: https://orcid.org/0000-0002-9873-8606